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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Team

Juan Jose Gonzalez Lopez

Juan Jose Gonzalez Lopez

Head of group
Microbiology
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Andres Antón Pagarolas

Andres Antón Pagarolas

Main researcher
Microbiology
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Ariadna Rando Segura

Ariadna Rando Segura

Main researcher
Microbiology
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Elena Sulleiro Igual

Elena Sulleiro Igual

Main researcher
Microbiology
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María Nieves Larrosa Escartin

María Nieves Larrosa Escartin

Main researcher
Microbiology
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Cristina Andrés Vargés

Cristina Andrés Vargés

Predoctoral researcher
Microbiology
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Juan Jose Gonzalez Lopez

Juan Jose Gonzalez Lopez

Head of group
Microbiology
Read more
Andres Antón Pagarolas

Andres Antón Pagarolas

Main researcher
Microbiology
Read more
Ariadna Rando Segura

Ariadna Rando Segura

Main researcher
Microbiology
Read more
Elena Sulleiro Igual

Elena Sulleiro Igual

Main researcher
Microbiology
Read more
María Nieves Larrosa Escartin

María Nieves Larrosa Escartin

Main researcher
Microbiology
Read more
Cristina Andrés Vargés

Cristina Andrés Vargés

Predoctoral researcher
Microbiology
Read more

Research lines

Development and validation of rapid microbiologic diagnostic devices

IP: -

Antimicrobial Resistance

Antimicrobial resistance is one of the main public health problems recognized by the main public health and sanitary agencies. Enterobacters such as Escherichia coli and Klebsiella pneumoniae, and other bacterial species such as Pseudomonas aeruginosa or Staphylococcus aureus are among the main pathogens causing infections and deaths associated with antimicrobial resistance.


Our research group works on the study of the mechanisms of action and resistance to antimicrobials of these and other bacteria of clinical interest, as well as the study of the mobile genetic elements where their resistance determinants can be found and possible therapeutic alternatives that can be considered to treat the infections they produce. Likewise, we work on the development, application and implementation of state-of-the-art processes, analysis and technologies that allow us to identify the molecular epidemiology, distribution and population structure of multi-resistant bacteria in order to early detect the emergence of high-risk epidemiological clones that can be transferred between patients, producing infections and/or outbreaks related to healthcare.

IP: Juan Jose Gonzalez Lopez, María Nieves Larrosa Escartin

Hepatitis

The liver disease unit is focused on studying the viral hepatitis with a special emphasis on the basic virology, its translational applications, and the evaluation of new serological and virological markers for patient follow-up thanks to the collaboration with both industry and basic/clinical research groups.  Moreover, it is also centred in contributing to the elimination of the hepatitis C virus (HCV), in evaluating HDV epidemiology in high prevalence populations, in inspecting viral variability to determine its relationship with disease progression, immune activation and the development of new therapeutic gene therapy strategies. Of note, the unit is also interested in studying HBV and HDV interaction in collaboration with the gene therapy group of CIMA-University of Navarra.

IP: Ariadna Rando Segura

Infectious sexual transmission diseases

The microbiology laboratory of the Vall d'Hebron hospital has a unit dedicated to the diagnosis of sexually transmitted infections (STIs). In this context, the VHIR microbiology group directs its priorities towards bacterial STIs (Neisseria gonorrhoeae, Chlamydia trachomatis, Mycoplasma genitalium and Treponema pallidum).


Our area of knowledge and research covers the following aspects:


- Evaluation and quality control of new diagnostic techniques, specifically multiplexed molecular techniques and resistance tests for the diagnosis and screening of STIs.

- Evaluation and quality control of new techniques for the study of susceptibility to antimicrobials in Neisseria gonorrhoeae.

- Evaluation and quality control of new serological techniques for the control of syphilis.

- Chlamydia trachomatis typing, specifically the serotypes responsible for lymphogranuloma venereum.

- Development of typing techniques through sequencing for the different bacterial STIs, with the aim of:

1. Discriminate STI cases in our country with those described in other countries.

2. Discriminate grouped cases of STIs within our geographic area.

3. Detect clones of special epidemiological relevance.

IP: Yannick Hoyos Mallecot

Projects

Is there a relationship between respiratory syncytial virus lower respiratory tract infection and preschool recurrent wheezing? An observational cohort study after universal nirsevimab prophylaxis implementation

IP: Antonio Moreno Galdó
Collaborators: Andres Antón Pagarolas, Mª Purificación Casanova Angulo, Amanda Ferrer Barberá, Jorgina Vila Soler, Pere Soler Palacín, Inés de Mir Messa, Ana Díez Izquierdo, Anna Creus Costa
Funding agency: Fundació La Marató de TV3
Funding: 132500
Reference: 202523-30
Duration: 30/04/2026 - 29/04/2029

Synthetic erythrocytes for the global control of influenza viruses: activities for technology transfer.

IP: Eva Baldrich Rubio
Collaborators: Xana Garcia Fernandez, Edgar Fuentes Fuentes, Maria Urpí Castany, Synthetic erythrocytes for the global control of influenza viruses: activities for technology transfer. , Cristina Andrés Vergés, Narcís Saubí Roca
Funding agency: Agència Gestió Ajuts Universitaris i de Recerca
Funding: 84000
Reference: 2025 INNOV 00007
Duration: 17/11/2025 - 16/06/2027

ProLINK-C BCN: Búsqueda prospectiva y vinculación de pacientes con hepatitis C crónica activa en Barcelona

IP: Ariadna Rando Segura
Collaborators: Albert Blanco Grau, Luz María Cruz Carlos, Adrián Najarro Centeno , David Tabernero Caellas
Funding agency: Gilead Sciences, S.L.U.
Funding: 27500
Reference: GILD25_29524
Duration: 01/01/2026 - 30/06/2027

Impacto del uso profiláctico de la doxiciclina para prevenir las infecciones de transmisión sexual y de la profilaxis preexposición frente a la infección por el VIH en la selección de resistencias a antimicrobianos

IP: Juan Jose Gonzalez Lopez
Collaborators: Ester del Barrio Tofiño, Maria Belén Viñado Perez, David Téllez Velasco, Patricia Álvarez López, Luis Lopez Perez, Vicente Descalzo Jorro, Albert Moreno Mingorance, Maria Eugènia Agustí Carol, Manuel Solivella Rodriguez, Claudia Broto Cortes, Jesus Trejo Zahinos
Funding agency: Instituto de Salud Carlos III
Funding: 185000
Reference: PI24/00765
Duration: 01/01/2025 - 31/12/2027

Thesis

Desenvolupament d'un sistema de diagnòstic automatitzat per la malària i l'esquistosomiasi urogenital utilitzant eines d'intel·ligència artificial i un microscopi robotitzat universal de baix cost.

PhD student: Carles Rubio Maturana
Director/s: Joan Joseph Munné
University: Universitat Autònoma de Barcelona
Year: 2025

Studying hepatitis B and hepatitis Delta viruses quasispecies by next-generation sequencing: conservation, variability, and interaction

PhD student: Beatriz Pacín Ruíz, Beatriz Pacín Ruíz, Beatriz Pacín Ruíz
Director/s: Francisco Rodríguez Frias, Maria Francesca Cortese , Maria Francesca Cortese
University: Universidad Autònoma de Barcelona
Year: 2023

Study of similarities and differences between circulating hepatitis B virus RNA and DNA quasispecies in different regions of viral genome and development of an antiviral gene therapy strategy

PhD student: Garcia Garcia, Selene
Director/s: Rodríguez Frias, Francisco, Tabernero Caellas, David, Cortese , Maria Francesca
University: Universitat Autònoma de Barcelona
Year: 2023

Caracterización genómica, estructura poblacional y determinantes de resistencia a antimicrobianos de Shigella sonnei, Shigella flexneri y Escherichia coli aislados de hombres que mantienen relaciones sexuales con hombres

PhD student: Albert Moreno Mingorance, Albert Moreno Mingorance
Director/s: Juan Jose Gonzalez Lopez
University:
Year: 2023

EPIDEMIOLOGÍA MOLECULAR Y CARACTERIZACIÓN DE RESISTENCIAS ANTIBÓTICAS DE TREPONEMA PALLIDUM SUBESPECIE PALLIDUM EN BARCELONA

PhD student: Candela Fernandez Naval
Director/s: Juan Jose Gonzalez Lopez
University: Universidad Autònoma de Barcelona
Year: 2022

Pre-clinical development of chimeric virus-like particles based HPV:HIV vaccines by using mammalian cell expression system: limitations and challenges

PhD student: Chun Wei Chen
Director/s: Joan Joseph Munné
University:
Year: 2022

Enfermedad de Chagas crónica: Estrategias de mejora del diagnóstico molecular y alternativas al cribado serológico convencional.

PhD student: Aroa Silgado Gimenez
Director/s: Elena Sulleiro Igual, Nuria Serre Delcor
University:
Year: 2022

Metapneumovirus humano: emergencia, impacto y evolución de nuevas variantes.

PhD student: Maria Piñana Moro, Maria Piñana Moro
Director/s: Tomàs Pumarola Suñé, Andres Antón Pagarolas
University: Universidad Autònoma de Barcelona
Year: 2022

Caracterización molecular de la resistencia de Mycobacterium tuberculosis en un área rural de Angola.

PhD student: Ariadna Rando Segura
Director/s: Rosa María Bartolomé Comas
University: Universidad Autònoma de Barcelona
Year: 2021

Epidemiología y resistencia antibiótica en Mycoplasma genitalium

PhD student: Miguel Fernández Huerta, Miguel Fernández Huerta
Director/s: Tomàs Pumarola Suñé
University: Universidad Autònoma de Barcelona
Year: 2021

Dinàmica poblacional i deriva antigènica de Bordetella pertussis i el paper d’altres espècies del gènere Bordetella en l’emergència de la tosferina al segle XXI

PhD student: Alba Mir Cros, Alba Mir Cros, Alba Mir Cros
Director/s: Juan Jose Gonzalez Lopez
University: Universidad Autònoma de Barcelona
Year: 2021

Los picornavirus. De la levedad a la gravedad

PhD student: Cristina Andrés Vergés
Director/s: Tomàs Pumarola Suñé
University: Universidad Autònoma de Barcelona
Year: 2019

Aplicación de las técnicas moleculares en el diagnóstico y seguimiento de pacientes con Enfermedad de Chagas crónica en un área no endémica

PhD student: Elena Sulleiro Igual, Elena Sulleiro Igual
Director/s: Tomàs Pumarola Suñé, Israel Molina Romero
University: Universidad Autònoma de Barcelona
Year: 2019

Serodiscordancia en el diagnóstico de la infección por trypanosoma cruzi en área no endémica

PhD student: Zaira Moure Garcia
Director/s: Tomàs Pumarola Suñé
University: Universidad Autònoma de Barcelona
Year: 2018

Vigilancia virológica del virus respiratorio sincitial humano: Epidemiología y caracterización molecular

PhD student: Laura Gimferrer Arriaga
Director/s: Tomàs Pumarola Suñé, Andres Antón Pagarolas
University: Universidad Autònoma de Barcelona
Year: 2018

Enterobacterias multirresitentes de origen clínico y ambiental: epidemiología molecular, vectores genéticos y alternativas terapéuticas

PhD student: Nuria Piedra Carrasco
Director/s: Juan Jose Gonzalez Lopez
University: Universidad Autònoma de Barcelona
Year: 2017

Participació dels factors de virulència extraintestinal d' Escherichia coli en la seva acció uropatògena

PhD student: Eva Moreno Pujol
Director/s: Antònia Andreu Domingo
University: Universidad Autònoma de Barcelona
Year: 2016

Monitorización continua de la colonización por bacterias multirresistentes en una unidad neonatal de cuidados intensivos. Relación entre colonización e infección

PhD student: María Nieves Larrosa Escartin, María Nieves Larrosa Escartin
Director/s: Guillem Prats Pastor, Rosa María Bartolomé Comas
University: Universidad Autònoma de Barcelona
Year: 2016

Neisseria gonorrhoeae: monitorització de la sensibilitat antimicrobiana, estudi de la dinàmica poblacional i caracterització molecular de les resistèncie

PhD student: Judit Serra Pladevall
Director/s: Antònia Andreu Domingo
University: Universidad Autònoma de Barcelona
Year: 2016

Diagnóstico y seguimiento microbiológico de la colonización respiratoria por Pseudomonas aeruginosa en fibrosis quística

PhD student: Estrella Caballero Requero, Estrella Caballero Requero
Director/s: Antònia Andreu Domingo, Tomàs Pumarola Suñé
University: Universidad Autònoma de Barcelona
Year: 2015

Aspectes microbiològics de Burkholderia cepacia complex en pacients amb fibrosi quística

PhD student: Antonio Mirambell Viñas
Director/s: Tomàs Pumarola Suñé
University: Universidad Autònoma de Barcelona
Year: 2015

Estudio de anticuerpos séricos específicos en enfermos tuberculosos

PhD student: Mª Teresa Tórtola Fernández, Mª Teresa Tórtola Fernández
Director/s: Nuria Martín Casabona, Nuria Martín Casabona
University: Universidad Autònoma de Barcelona
Year: 2012

Las beta-lactamasas cromosómicas de enterobacterias: regulación y difusión plasmídica

PhD student: Juan Jose Gonzalez Lopez, Juan Jose Gonzalez Lopez
Director/s: Guillem Prats Pastor
University: Universidad Autònoma de Barcelona
Year: 2009

Estimación del volumen de las lesiones focales hemorrágicas intracraneales traumáticas y sus implicaciones en la toma de decisiones clínicas. Estudio comparativo entre un método planimétrico asistido por ordenador y el método del elipsoide

PhD student: Mayli Lung Suarez, Mayli Lung Suarez
Director/s: Joan Sahuquillo Barris
University: Universidad de Salamanca
Year: 2004

Blog

News

The technology could help make stool sample screening more comprehensive and facilitate the identification of parasitic findings for subsequent expert review.

The initiative focuses on awareness, prevention, and the normalization of sexual health check-ups among young people.

All patients showed a favorable clinical course and responded well to antibiotic treatment, without complications.