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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Team

Cristina Andrés Vargés

Cristina Andrés Vargés

Predoctoral researcher
Microbiology
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Narcís Saubí Roca

Narcís Saubí Roca

Senior researcher
Microbiology
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Carles Rubio Maturana

Carles Rubio Maturana

Main researcher
Microbiology
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Maria Arnedo Muñoz

Maria Arnedo Muñoz

Predoctoral researcher
Microbiology
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Alejandro Mediavilla Perez

Alejandro Mediavilla Perez

Research technician
Microbiology
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Lidia Goterris Bonet

Lidia Goterris Bonet

Research technician
Microbiology
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Cristina Andrés Vargés

Cristina Andrés Vargés

Predoctoral researcher
Microbiology
Read more
Narcís Saubí Roca

Narcís Saubí Roca

Senior researcher
Microbiology
Read more
Carles Rubio Maturana

Carles Rubio Maturana

Main researcher
Microbiology
Read more
Maria Arnedo Muñoz

Maria Arnedo Muñoz

Predoctoral researcher
Microbiology
Read more
Alejandro Mediavilla Perez

Alejandro Mediavilla Perez

Research technician
Microbiology
Read more
Lidia Goterris Bonet

Lidia Goterris Bonet

Research technician
Microbiology
Read more

Research lines

Infectious sexual transmission diseases

The microbiology laboratory of the Vall d'Hebron hospital has a unit dedicated to the diagnosis of sexually transmitted infections (STIs). In this context, the VHIR microbiology group directs its priorities towards bacterial STIs (Neisseria gonorrhoeae, Chlamydia trachomatis, Mycoplasma genitalium and Treponema pallidum).


Our area of knowledge and research covers the following aspects:


- Evaluation and quality control of new diagnostic techniques, specifically multiplexed molecular techniques and resistance tests for the diagnosis and screening of STIs.

- Evaluation and quality control of new techniques for the study of susceptibility to antimicrobials in Neisseria gonorrhoeae.

- Evaluation and quality control of new serological techniques for the control of syphilis.

- Chlamydia trachomatis typing, specifically the serotypes responsible for lymphogranuloma venereum.

- Development of typing techniques through sequencing for the different bacterial STIs, with the aim of:

1. Discriminate STI cases in our country with those described in other countries.

2. Discriminate grouped cases of STIs within our geographic area.

3. Detect clones of special epidemiological relevance.

IP: Yannick Hoyos Mallecot

Internacional Health

The International Health Unit has several lines of research in the field of diagnosis of imported infections, both in our centre and in endemic countries. This unit has a laboratory at the HUVH and another at the Drassanes Unit with extensive experience in highly complex parasitological diagnosis, which allow access to multiple samples from travellers and immigrants. The unit has extensive experience in coordinating projects and training programs in laboratories in rural areas of low-income countries. The development of new technology applied to the diagnosis of the main parasitic infections is another of the axes of our unit. The results of the research studies have been translated into different national and international publications and into the writing of doctoral theses. Our centre is CSUR of Tropical Medicine and International Health.


Lines of investigation:


- Hemoflagellates: Development studies and evaluation of molecular biology techniques for the diagnosis and typing of Trypanosoma cruzi and Leishmania sp. A project financed by Roche is currently underway to validate serological techniques for the diagnosis of Chagas disease both in imported patients and in several Latin American countries.

- Malaria: Studies on the application of molecular techniques in the diagnosis of malaria in endemic countries. Detection of Plasmodium sp species by PCR, co-infections and alterations in the genes that encode the proteins that are used for rapid diagnostic techniques.

- Helminthiasis: Studies of the application of molecular techniques in the diagnosis of different helminthiasis, mainly schistosomiasis and strongyloidiasis, both in imported cases and in endemic areas.

- Innovation and technology applied to the diagnosis of tropical diseases:

1. Development of a mobile application for the microscopic diagnosis of malaria and schistosomiasis in low-income countries.

2. Collaboration in the development of rapid immunoassays and point-of-care (POC) devices for the quantitative diagnosis of malaria.

3. Interactive training programs for laboratory technicians.

4. Validation of samples collected on dry paper (DBS) for the diagnosis of imported infections.


IP: Elena Sulleiro Igual

Microorganisms that cause vaccine-preventable diseases

Vaccines confer active immunoprotection, which is why they constitute one of the medical instruments that have contributed the most to the prevention of infectious diseases, estimating that around 2.5 million deaths are avoided annually thanks to them. The significant decrease in the incidence of diseases such as diphtheria, tetanus, poliomyelitis, invasive meningococcal disease or whooping cough, among others, or even the eradication of smallpox, is clear proof of their effectiveness. Despite this, in recent years a reemergence of certain infections that can be prevented by vaccination and that are caused by specific bacteria have been detected. Some examples of these bacteria are Neisseria meningitidis, which causes invasive meningococcal disease, or Bordetella pertussis, which produces whooping cough.


The VHIR microbiology research group is working on the study of the microbiological factors that may be conditioning the reemergence of these infections, as well as the characteristics of the patients who suffer from them and that may contribute to their acquisition and development. To this end, we work on the genomic characterization of bacterial populations such as N. meningitidis or B. pertussis through state-of-the-art technologies that allow us to monitor the evolution and adaptation of circulating clones in our environment, with the aim of early identification of the appearance of high-risk clones for public health, the rapid detection of the existence of transmission clusters between people, the emergence of strains not covered by currently used vaccines, and the identification of strains resistant to first- and second-line antimicrobial treatments, with the aim of in order to be able to design optimal measures to prevent the acquisition of these diseases, reduce their dissemination and optimize antimicrobial treatments.


Competitive projects that are currently being developed in this line of work:


Secuenciación de nueva generación para el estudio de la dinámica poblacional, adaptación e identificación de nuevos antígenos vacunales de B. pertussis y B. holmesii

PI: Juan José González López

Collaborators: Albert Moreno Mingorance

Financing entity: Instituto de Salud Carlos III

Financing: 82400

Reference: FI19/00315

Duration: 01/01/2020 - 31/12/2023


Secuenciación de nueva generación para el estudio de la dinámica poblacional, adaptación e identificación de nuevos antígenos vacunales de B. pertussis y B. holmesii. Estudio PERT-ESP-VAC

PI: Juan José González López

Collaborators: María Teresa Martín Gómez, Gema Codina Grau, Carlos Rodrigo Gonzalo de Liria, Alba Mir Cros, Thais Cornejo Sánchez, Sonia Maria Uriona Tuma

Financing entity: Instituto de Salud Carlos III

Financing: 111320

Reference: PI18/00703

Duration: 01/01/2019 - 30/06/2023


Caracterización de Neisseria meningitidis tras la introducción de la vacuna frente al serogrupo B e identificación de factores predisponentes para la enfermedad meningocócica invasiva

PI: Juan José González López

Collaborators: Manuel Hernández González, José Ángel Rodrigo Pendás, Aina Aguiló Cucurull, Alba Mir Cros, Albert Moreno Mingorance, Thais Cornejo Sánchez, Andrea Martín Nalda

Financing entity: Instituto de Salud Carlos III

Financing: 123420

Reference: PI21/00132

Duration: 01/01/2022 - 31/12/2024


IP: Juan Jose Gonzalez Lopez

Sepsis

IP: María Nieves Larrosa Escartin, Juan Jose Gonzalez Lopez

Projects

Desarrollo de tests rápidos intercambiables para el control multifacético de las infecciones respiratorias

IP: Eva Baldrich Rubio
Collaborators: Romina Dieli Crimi, Cristina Andrés Vergés
Funding agency: Ministerio de Ciencia e Innovación-MICINN
Funding: 141875
Reference: PID2023-148950OB-C22
Duration: 01/09/2024 - 31/12/2027

Ministerio de Ciencia

Plataforma ISCIII de Biomodelos y Biobancos

IP: Isabel Novoa Garcia
Collaborators: Joaquim Vives Armengol, Anna Duarri Piqué, Eva Colas Ortega, Oriol Bestard Matamoros, Marta Rosal Fontana, Carmen Espejo Ruiz, Marielle Esteves Coelho, Juan Jose Gonzalez Lopez, Sheyla Pascual Martín, Alejandro Tomasello Weitz, Shirley Guzmán Avilés
Funding agency: Instituto de Salud Carlos III
Funding: 137460
Reference: PT23/00040
Duration: 01/01/2024 - 31/12/2026

Caracterización de las infecciones y de su impacto en pacientes con Esclerosis Múltiple en la era de los tratamientos inmunosupresores de alta eficacia

IP: Susana Otero Romero
Collaborators: Imane Boutitah Benyaich, Blanca Borras Bermejo, Anna Falcó Roget, Mar Tintore Subirana, Ana Zabalza de Torres, Jesus Trejo Zahinos, Enrique Rodríguez Zafra
Funding agency: Instituto de Salud Carlos III
Funding: 115000
Reference: PI23/01654
Duration: 01/01/2024 - 31/12/2026

Estudio multicéntrico para la mejora del diagnóstico y la caracterización molecular de las diferentes formas clínicas de leishmaniasis en el área mediterránea.

IP: Elena Sulleiro Igual
Collaborators: Pau Bosch Nicolau, Aroa Silgado Gimenez, Lidia Goterris Bonet
Funding agency: Instituto de Salud Carlos III
Funding: 108750
Reference: PI23/01942
Duration: 01/01/2024 - 31/12/2026

Blog

News

The study results show that the local presence of IL-1β promotes the development of myeloid cells with an immunosuppressive function.

The project has developed a low-cost system to diagnose malaria and schistosomiasis using artificial intelligence and a robotic microscope.

The collaboration will focus on several key areas of mutual interest in microbiology in particular antimicrobial resistance and stewardship.