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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Team

Carles Rubio Maturana

Carles Rubio Maturana

Main researcher
Microbiology
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Maria Arnedo Muñoz

Maria Arnedo Muñoz

Predoctoral researcher
Microbiology
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Daniel Romero Herrero

Daniel Romero Herrero

Research technician
Microbiology
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González Sánchez Alejandra

González Sánchez Alejandra

Predoctoral researcher
Microbiology
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Mª Teresa Tórtola Fernández

Mª Teresa Tórtola Fernández

Senior researcher
Microbiology
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Alicia Barberan Masegosa

Alicia Barberan Masegosa

Research technician
Microbiology
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Carles Rubio Maturana

Carles Rubio Maturana

Main researcher
Microbiology
Read more
Maria Arnedo Muñoz

Maria Arnedo Muñoz

Predoctoral researcher
Microbiology
Read more
Daniel Romero Herrero

Daniel Romero Herrero

Research technician
Microbiology
Read more
González Sánchez Alejandra

González Sánchez Alejandra

Predoctoral researcher
Microbiology
Read more
Mª Teresa Tórtola Fernández

Mª Teresa Tórtola Fernández

Senior researcher
Microbiology
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Alicia Barberan Masegosa

Alicia Barberan Masegosa

Research technician
Microbiology
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Research lines

Internacional Health

The International Health Unit has several lines of research in the field of diagnosis of imported infections, both in our centre and in endemic countries. This unit has a laboratory at the HUVH and another at the Drassanes Unit with extensive experience in highly complex parasitological diagnosis, which allow access to multiple samples from travellers and immigrants. The unit has extensive experience in coordinating projects and training programs in laboratories in rural areas of low-income countries. The development of new technology applied to the diagnosis of the main parasitic infections is another of the axes of our unit. The results of the research studies have been translated into different national and international publications and into the writing of doctoral theses. Our centre is CSUR of Tropical Medicine and International Health.


Lines of investigation:


- Hemoflagellates: Development studies and evaluation of molecular biology techniques for the diagnosis and typing of Trypanosoma cruzi and Leishmania sp. A project financed by Roche is currently underway to validate serological techniques for the diagnosis of Chagas disease both in imported patients and in several Latin American countries.

- Malaria: Studies on the application of molecular techniques in the diagnosis of malaria in endemic countries. Detection of Plasmodium sp species by PCR, co-infections and alterations in the genes that encode the proteins that are used for rapid diagnostic techniques.

- Helminthiasis: Studies of the application of molecular techniques in the diagnosis of different helminthiasis, mainly schistosomiasis and strongyloidiasis, both in imported cases and in endemic areas.

- Innovation and technology applied to the diagnosis of tropical diseases:

1. Development of a mobile application for the microscopic diagnosis of malaria and schistosomiasis in low-income countries.

2. Collaboration in the development of rapid immunoassays and point-of-care (POC) devices for the quantitative diagnosis of malaria.

3. Interactive training programs for laboratory technicians.

4. Validation of samples collected on dry paper (DBS) for the diagnosis of imported infections.


IP: Elena Sulleiro Igual

Sepsis

IP: María Nieves Larrosa Escartin, Juan Jose Gonzalez Lopez

Diseases due to viral infections of the respiratory tract

The main objectives of the Respiratory Virus Unit are the microbiological diagnosis of viral respiratory infection, participation in virological surveillance of respiratory viruses, and teaching. In addition to incorporating the state-of-the-art technology for the detection and automation of laboratory processes, we participate in the development and evaluation of new microbiological diagnostic methods in collaboration with the industry. But, beyond being able to detect already known respiratory viruses, and others not so well known, that cause acute respiratory disease in the human population, one of our vocations is virological surveillance. For this, it is necessary to be able to characterize the respiratory viruses detected, either in the community or in the hospitalized population, using genotypic and phenotypic methods, which allow us to better identify them, to know those characteristics that make them of special interest either because their antigenic characteristics have changed, because they have acquired resistance to different antivirals, because they have changed their tropism for other hosts or tissues, or because they are associated with greater severity, among others. In addition, working with new generation sequencing techniques and bioinformatics tools has allowed us to study in depth the viral populations in the host. This work would not be possible if we did not work in a multidisciplinary way with clinical specialists, epidemiologists, mathematicians and public health specialists. But beyond the laboratory results, the products developed and our participation in national and international surveillance networks, we work to disseminate the knowledge acquired, thus contributing to greater awareness of viral respiratory infection and of the viral agents that cause it.


IP: Andres Antón Pagarolas

Microorganisms that cause vaccine-preventable diseases

Vaccines confer active immunoprotection, which is why they constitute one of the medical instruments that have contributed the most to the prevention of infectious diseases, estimating that around 2.5 million deaths are avoided annually thanks to them. The significant decrease in the incidence of diseases such as diphtheria, tetanus, poliomyelitis, invasive meningococcal disease or whooping cough, among others, or even the eradication of smallpox, is clear proof of their effectiveness. Despite this, in recent years a reemergence of certain infections that can be prevented by vaccination and that are caused by specific bacteria have been detected. Some examples of these bacteria are Neisseria meningitidis, which causes invasive meningococcal disease, or Bordetella pertussis, which produces whooping cough.


The VHIR microbiology research group is working on the study of the microbiological factors that may be conditioning the reemergence of these infections, as well as the characteristics of the patients who suffer from them and that may contribute to their acquisition and development. To this end, we work on the genomic characterization of bacterial populations such as N. meningitidis or B. pertussis through state-of-the-art technologies that allow us to monitor the evolution and adaptation of circulating clones in our environment, with the aim of early identification of the appearance of high-risk clones for public health, the rapid detection of the existence of transmission clusters between people, the emergence of strains not covered by currently used vaccines, and the identification of strains resistant to first- and second-line antimicrobial treatments, with the aim of in order to be able to design optimal measures to prevent the acquisition of these diseases, reduce their dissemination and optimize antimicrobial treatments.


Competitive projects that are currently being developed in this line of work:


Secuenciación de nueva generación para el estudio de la dinámica poblacional, adaptación e identificación de nuevos antígenos vacunales de B. pertussis y B. holmesii

PI: Juan José González López

Collaborators: Albert Moreno Mingorance

Financing entity: Instituto de Salud Carlos III

Financing: 82400

Reference: FI19/00315

Duration: 01/01/2020 - 31/12/2023


Secuenciación de nueva generación para el estudio de la dinámica poblacional, adaptación e identificación de nuevos antígenos vacunales de B. pertussis y B. holmesii. Estudio PERT-ESP-VAC

PI: Juan José González López

Collaborators: María Teresa Martín Gómez, Gema Codina Grau, Carlos Rodrigo Gonzalo de Liria, Alba Mir Cros, Thais Cornejo Sánchez, Sonia Maria Uriona Tuma

Financing entity: Instituto de Salud Carlos III

Financing: 111320

Reference: PI18/00703

Duration: 01/01/2019 - 30/06/2023


Caracterización de Neisseria meningitidis tras la introducción de la vacuna frente al serogrupo B e identificación de factores predisponentes para la enfermedad meningocócica invasiva

PI: Juan José González López

Collaborators: Manuel Hernández González, José Ángel Rodrigo Pendás, Aina Aguiló Cucurull, Alba Mir Cros, Albert Moreno Mingorance, Thais Cornejo Sánchez, Andrea Martín Nalda

Financing entity: Instituto de Salud Carlos III

Financing: 123420

Reference: PI21/00132

Duration: 01/01/2022 - 31/12/2024


IP: Juan Jose Gonzalez Lopez

Projects

Plataforma ISCIII de Biomodelos y Biobancos

IP: Isabel Novoa Garcia
Collaborators: Joaquim Vives Armengol, Anna Duarri Piqué, Eva Colas Ortega, Oriol Bestard Matamoros, Marta Rosal Fontana, Carmen Espejo Ruiz, Marielle Esteves Coelho, Juan Jose Gonzalez Lopez, Sheyla Pascual Martín, Alejandro Tomasello Weitz, Shirley Guzmán Avilés
Funding agency: Instituto de Salud Carlos III
Funding: 137460
Reference: PT23/00040
Duration: 01/01/2024 - 31/12/2026

Caracterización de las infecciones y de su impacto en pacientes con Esclerosis Múltiple en la era de los tratamientos inmunosupresores de alta eficacia

IP: Susana Otero Romero
Collaborators: Imane Boutitah Benyaich, Blanca Borras Bermejo, Anna Falcó Roget, Mar Tintore Subirana, Ana Zabalza de Torres, Jesus Trejo Zahinos, Enrique Rodríguez Zafra
Funding agency: Instituto de Salud Carlos III
Funding: 115000
Reference: PI23/01654
Duration: 01/01/2024 - 31/12/2026

Estudio multicéntrico para la mejora del diagnóstico y la caracterización molecular de las diferentes formas clínicas de leishmaniasis en el área mediterránea.

IP: Elena Sulleiro Igual
Collaborators: Pau Bosch Nicolau, Estudio multicéntrico para la mejora del diagnóstico y la caracterización molecular de las diferentes formas clínicas de leishma, Estudio multicéntrico para la mejora del diagnóstico y la caracterización molecular de las diferentes formas clínicas de leishma
Funding agency: Instituto de Salud Carlos III
Funding: 108750
Reference: PI23/01942
Duration: 01/01/2024 - 31/12/2026

Búsqueda de biomarcadores (inmunológicos y/o celulares) predictivos de respuesta virológica o de control de la infección en la hepatitis crónica D.

IP: Maria Buti Ferret
Collaborators: Maria Francesca Cortese
Funding agency: Instituto de Salud Carlos III
Funding: 220000
Reference: PI23/01065
Duration: 01/01/2024 - 31/12/2026

Blog

News

All patients showed a favorable clinical course and responded well to antibiotic treatment, without complications.

The study results show that the local presence of IL-1β promotes the development of myeloid cells with an immunosuppressive function.

The project has developed a low-cost system to diagnose malaria and schistosomiasis using artificial intelligence and a robotic microscope.