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Clinical and Translational Bioinformatics

Our main research aims at understanding the molecular basis of hereditary disease, integrating two complementary aspects: the molecular impact of genetic variants and the regulatory role of genetic background. At a technical level, to reach our objective, we integrate the results of the most advanced genomic experiments (single-cell RNAsq, NGS sequencing, etc.) using state-of-the-art machine learning tools.

As a result of our efforts, we have recently made significant advances in understanding the functional effect of BRCA1/2 protein variants underlying hereditary breast and ovarian cancers. In fact, the methodology developed earned us the second position in the group classification at the international competition CAGI 5, held in 2019.

Publications

Compensated pathogenic variants in coagulation factors VIII and IX present complex mapping between molecular impact and hemophilia severity.

PMID: 31267011
Journal: Scientific Reports
Year: 2019
Reference: Sci Rep. 2019 Jul 2;9(1):9538. doi: 10.1038/s41598-019-45916-3.
Impact factor: 4.011
Publication type: Paper in international publication
Authors: Marin, Oscar, Aguirre, Josu, de la Cruz, Xavier et al.
DOI: 10.1038/s41598-019-45916-3

BRCA1- and BRCA2-specific in silico tools for variant interpretation in the CAGI 5 ENIGMA challenge.

PMID: 31112341
Journal: HUMAN MUTATION
Year: 2019
Reference: Hum Mutat. 2019 Sep;40(9):1593-1611. doi: 10.1002/humu.23802. Epub 2019 Jul 3.
Impact factor: 4.453
Publication type: Paper in international publication
Authors: Bonache, Sandra, Padilla, Natalia, Moles-Fernandez, Alejandro, Riera, Casandra, Montalban, Gemma, Ozkan, Selen, Ootes, Lars, de la Cruz, Xavier, Gutierrez-Enriquez, Sara, Diez, Orland et al.
DOI: 10.1002/humu.23802

Structural and Computational Characterization of Disease-Related Mutations Involved in Protein-Protein Interfaces.

PMID: 30934865
Journal: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Year: 2019
Reference: Int J Mol Sci. 2019 Mar 29;20(7). pii: ijms20071583. doi: 10.3390/ijms20071583.
Impact factor: 4.183
Publication type: Paper in international publication
Authors: Navio, Damaris, Rosell, Mireia, Aguirre, Josu, de la Cruz, Xavier, Fernandez-Recio, Juan et al.
DOI: 10.3390/ijms20071583

Increased dNTP pools rescue mtDNA depletion in human POLG-deficient fibroblasts.

PMID: 30848931
Journal: FASEB JOURNAL
Year: 2019
Reference: FASEB J. 2019 Jun;33(6):7168-7179. doi: 10.1096/fj.201801591R. Epub 2019 Mar 8.
Impact factor: 5.391
Publication type: Paper in international publication
Authors: Blazquez-Bermejo, Cora, Carreno-Gago, Lidia, Molina-Granada, David, Aguirre, Josu, Ramon, Javier, Torres-Torronteras, Javier, Cabrera-Perez, Raquel, Martin, Miguel Angel, Dominguez-Gonzalez, Cristina, de la Cruz, Xavier et al.
DOI: 10.1096/fj.201801591R

Blog

News

The Clinical and Translational Bioinformatics Group at VHIR has been responsible for the computational analysis of two international genetic studies led by the Children's Hospital of Philadelphia.

The Clinical and Translational Bioinformatics group is launching the project to use cutting-edge artificial intelligence in the identification of pathogenic variants.