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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Publications

Characteristics of 24 SARS-CoV-2-Sequenced Reinfection Cases in a Tertiary Hospital in Spain.

PMID: 35722299
Journal: Frontiers in Microbiology
Year: 2022
Reference: Front Microbiol. 2022 May 26;13:876409. doi: 10.3389/fmicb.2022.876409. eCollection 2022.
Impact factor: 5.64
Publication type: Paper in international publication
Authors: Codina, Maria Gema, Martin, Maria Carmen, Castillo, Carla, Garcia-Comunas, Karen, Vasquez-Mercado, Rodrigo, Martins-Martins, Reginald, Colomer-Castell, Sergi, Pumarola, Tomas, Campins, Magda, Quer, Josep et al.
DOI: 10.3389/fmicb.2022.876409

Invasive pneumococcal disease in children under 60 months before and after availability of 13-valent conjugate vaccine.

PMID: 34238710
Journal: ANALES DE PEDIATRIA
Year: 2022
Reference: An Pediatr (Engl Ed). 2022 Jun;96(6):501-510. doi: 10.1016/j.anpede.2021.06.005. Epub 2021 Jul 6.
Impact factor: 1.5
Publication type: Paper in national publication
Authors: Martinez-Osorio, Johanna, Garcia-Garcia, Juan Jose, Moraga-Llop, Fernando, Diaz, Alvaro, Hernandez, Sergi, Sole-Ribalta, Anna, Gonzalez-Peris, Sebastia, Izquierdo, Conchita, Esteva, Cristina, Codina, Gemma et al.
DOI: 10.1016/j.anpede.2021.06.005

The risk of COVID-19 death is much greater and age-dependent with type I IFN autoantibodies.

PMID: 35043109
Journal:
Year: 2022
Reference: Res Sq. 2022 Jan 14. doi: 10.21203/rs.3.rs-1225906/v1.
Impact factor: 0
Publication type: Letter or abstract
Authors: Riviere, Jacques G, Garcia-Prat, Marina, Parra-Martinez, Alba, Soler-Palacin, Pere et al.
DOI: 10.21203/rs.3.rs-1225906/v1

Efficacy and safety of hydroxychloroquine in healthcare professionals with mild SARS-CoV-2 infection: Prospective, non-randomized trial.

PMID: 35680347
Journal: ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA
Year: 2022
Reference: Enferm Infecc Microbiol Clin. 2022 Jun-Jul;40(6):289-295. doi: 10.1016/j.eimce.2020.10.015.
Impact factor: 1.731
Publication type: Paper in national publication
Authors: Guillen, Elena, Ayora, Alfonso, Agusti, Antonia, Anton, Andres, Aguilera, Cristina, Vidal, Xavier, Andres, Cristina, Alonso, Manuel, Espuga, Meritxell, Esperalba, Juliana et al.
DOI: 10.1016/j.eimce.2020.10.015

Multilocus sequence typing of Treponema pallidum subsp. pallidum in Barcelona.

PMID: 34414771
Journal: Future Microbiology
Year: 2021
Reference: Future Microbiol. 2021 Aug 20. doi: 10.2217/fmb-2021-0037.
Impact factor: 3.165
Publication type: Paper in international publication
Authors: Fernandez-Naval, Candela, Arando, Maider, Espasa, Mateu, Anton, Andres, Fernandez-Huerta, Miguel, Silgado, Aroa, Pinatar, Cristina, Zarzuela, Francesc, Gonzalez-Lopez, Juan Jose, Serra-Pladevall, Judit et al.
DOI: 10.2217/fmb-2021-0037

Host-dependent editing of SARS-CoV-2 in COVID-19 patients.

PMID: 34402744
Journal: Emerging Microbes & Infections
Year: 2021
Reference: Emerg Microbes Infect. 2021 Dec;10(1):1777-1789. doi: 10.1080/22221751.2021.1969868.
Impact factor: 7.163
Publication type: Paper in international publication
Authors: Quer, Josep, Anton, Andres, Rodriguez-Frias, Francisco, Esteban, Juan Ignacio, Gregori, Josep, Cortese, Maria Francesca, Pinana, Maria, Campos, Carolina, Garcia-Cehic, Damir, Andres, Cristina et al.
DOI: 10.1080/22221751.2021.1969868

Monitoring Emergence of the SARS-CoV-2 B.1.1.7 Variant through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19).

PMID: 34397216
Journal: ENVIRONMENTAL SCIENCE & TECHNOLOGY
Year: 2021
Reference: Environ Sci Technol. 2021 Sep 7;55(17):11756-11766. doi: 10.1021/acs.est.1c03589. Epub 2021 Aug 16.
Impact factor: 9.028
Publication type: Paper in international publication
Authors: Lois, Marta, Polo, David, Sanchez, Gloria, Perez-Cataluna, Alba, Diaz-Reolid, Azahara, Anton, Andres, Gregori, Josep, Garcia-Cehic, Damir, Quer, Josep, Palau, Margarita et al.
DOI: 10.1021/acs.est.1c03589

Exploring the diversity of coronavirus in sewage during COVID-19 pandemic: Don't miss the forest for the trees.

PMID: 34391155
Journal: SCIENCE OF THE TOTAL ENVIRONMENT
Year: 2021
Reference: Sci Total Environ. 2021 Dec 15;800:149562. doi: 10.1016/j.scitotenv.2021.149562. Epub 2021 Aug 9.
Impact factor: 7.963
Publication type: Paper in international publication
Authors: Martinez-Puchol, Sandra, Itarte, Marta, Rusinol, Marta, Fores, Eva, Mejias-Molina, Cristina, Andres, Cristina, Anton, Andres, Quer, Josep, Abril, Josep F, Girones, Rosina et al.
DOI: 10.1016/j.scitotenv.2021.149562

[Clinical features and origin of cases of parotiditis in an emergency department].

PMID: 31883748
Journal: ANALES DE PEDIATRIA
Year: 2020
Reference: An Pediatr (Barc). 2020 Aug;93(2):127-129. doi: 10.1016/j.anpedi.2019.11.004. Epub 2019 Dec 26.
Impact factor: 1.313
Publication type: Letter whit IF
Authors: Scatti-Regas, Aina, Aguilar-Ferrer, Marta Carmen, Anton-Pagarolas, Andres, Martinez-Gomez, Xavier, Gonzalez-Peris, Sebastia et al.
DOI: 10.1016/j.anpedi.2019.11.004

Naturally occurring SARS-CoV-2 gene deletions close to the spike S1/S2 cleavage site in the viral quasispecies of COVID19 patients.

PMID: 32752979
Journal: Emerging Microbes & Infections
Year: 2020
Reference: Emerg Microbes Infect. 2020 Dec;9(1):1900-1911. doi: 10.1080/22221751.2020.1806735.
Impact factor: 5.776
Publication type: Paper in international publication
Authors: Almirante, Benito, Esteban, Juan Ignacio, Pumarola, Tomas, Anton, Andres, Quer, Josep, Ferrer, Ricard, Campins, Magda, Martin, Maria Carmen, Quer, Susanna, Andres, Cristina et al.
DOI: 10.1080/22221751.2020.1806735

[Serogroup C invasive meningococcal disease in the post-vaccine era and vaccine failures].

PMID: 32741733
Journal: ANALES DE PEDIATRIA
Year: 2020
Reference: An Pediatr (Barc). 2020 Dec;93(6):396-402. doi: 10.1016/j.anpedi.2020.02.008. Epub 2020 Jul 30.
Impact factor: 1.313
Publication type: Paper in national publication
Authors: Rius, Neus, Lung, Mayli, Fernandez-San Jose, Carolina, Iglesias, Tamara, Esperalba, Juliana, Moraga-Llop, Fernando A, Soler-Palacin, Pere et al.
DOI: 10.1016/j.anpedi.2020.02.008

Impact of the 13-Valent Conjugated Pneumococcal Vaccine on the Direct Costs of Invasive Pneumococcal Disease Requiring Hospital Admission in Children Aged < 5 Years: A Prospective Study.

PMID: 32679762
Journal: Vaccines
Year: 2020
Reference: Vaccines (Basel). 2020 Jul 15;8(3). pii: vaccines8030387. doi: 10.3390/vaccines8030387.
Impact factor: 4.086
Publication type: Paper in international publication
Authors: Dominguez, Angela, Hernandez, Sergi, Navas, Encarna, Aznar-Lou, Ignacio, Ciruela, Pilar, Garcia-Garcia, Juan Jose, Moraga-Llop, Fernando, Munoz-Almagro, Carmen, Codina, Gemma, F de Sevilla, Mariona et al.
DOI: 10.3390/vaccines8030387

Sexual Transmission of Intestinal Parasites and Other Enteric Pathogens among Men Who Have Sex with Men Presenting Gastrointestinal Symptoms in an STI Unit in Barcelona, Spain: A Cross-Sectional Study.

PMID: 31549611
Journal: AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
Year: 2019
Reference: Am J Trop Med Hyg. 2019 Dec;101(6):1388-1391. doi: 10.4269/ajtmh.19-0312.
Impact factor: 2.315
Publication type: Paper in international publication
Authors: Espasa, Mateu, Sulleiro, Elena, Pumarola, Tomas, Garcia-Perez, Jorge-Nestor, Vall, Marti, Fernandez-Huerta, Miguel, Zarzuela, Francesc, Barbera, Maria-Jesus, Arando, Maider, Esperalba, Juliana et al.
DOI: 10.4269/ajtmh.19-0312

Community-acquired respiratory viruses are a risk factor for chronic lung allograft dysfunction.

PMID: 30561555
Journal: CLINICAL INFECTIOUS DISEASES
Year: 2019
Reference: Clin Infect Dis. 2019 Sep 13;69(7):1192-1197. doi: 10.1093/cid/ciy1047.
Impact factor: 9.055
Publication type: Paper in international publication
Authors: Ferrer, Ricard, Peghin, Maddalena, Los-Arcos, Ibai, Hirsch, Hans H, Codina, Gemma, Monforte, Victor, Bravo, Carles, Berastegui, Cristina, Jauregui, Alberto, Romero, Laura et al.
DOI: 10.1093/cid/ciy1047

Enhanced molecular typing and macrolide and tetracycline-resistance mutations of Treponema pallidum in Barcelona.

PMID: 31512516
Journal: Future Microbiology
Year: 2019
Reference: Future Microbiol. 2019 Sep;14:1099-1108. doi: 10.2217/fmb-2019-0123.
Impact factor: 2.746
Publication type: Paper in international publication
Authors: Pumarola, Tomas, Vall-Mayans, Marti, Esperalba, Juliana, Sulleiro, Elena, Serra-Pladevall, Judit, Villatoro, Ana M, Fernandez-Naval, Candela, Arando, Maider, Espasa, Mateu, Anton, Andres et al.
DOI: 10.2217/fmb-2019-0123

Leishmaniasis and tumor necrosis factor alpha antagonists in the Mediterranean basin. A switch in clinical expression.

PMID: 31469834
Journal: PLoS Neglected Tropical Diseases
Year: 2019
Reference: PLoS Negl Trop Dis. 2019 Aug 30;13(8):e0007708. doi: 10.1371/journal.pntd.0007708. eCollection 2019 Aug.
Impact factor: 4.487
Publication type: Paper in international publication
Authors: Bosch-Nicolau, Pau, Ubals, Maria, Salvador, Fernando, Sanchez-Montalva, Adrian, Aparicio, Gloria, Erra, Alba, Martinez de Salazar, Pablo, Sulleiro, Elena, Molina, Israel et al.
DOI: 10.1371/journal.pntd.0007708

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