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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Publications

Transforming a public university hospital and its area of influence into a comprehensive resource in response to the COVID-19 pandemic.

PMID: 35780057
Journal: Journal of healthcare quality research
Year: 2022
Reference: J Healthc Qual Res. 2022 Mar 10. pii: S2603-6479(22)00012-4. doi: 10.1016/j.jhqr.2022.02.006.
Impact factor: 0
Publication type: Paper in international publication
Authors: Rodriguez, I; Barba, M-A; Cebrian, R; Abadias, M-J; Aller, M-B; Cossio-Gil, Y; Roman, A; Dominguez, J-M; Campins, M; Martinez, J et al.
DOI: 10.1016/j.jhqr.2022.02.006

Endotoxin and Cytokine Sequential Hemoadsorption in Septic Shock and Multi-Organ Failure.

PMID: 34515070
Journal: BLOOD PURIFICATION
Year: 2022
Reference: Blood Purif. 2022;51(7):630-633. doi: 10.1159/000518229. Epub 2021 Sep 7.
Impact factor: 2.614
Publication type: Letter or abstract
Authors: Gonzalez, Juan Jose; Larrosa, Nieves; Perez-Carrasco, Marcos; Ruiz-Sanmartin, Adolf; Palmada, Clara; Chiscano-Camon, Luis; Ruiz-Rodriguez, Juan Carlos; Hernandez-Gonzalez, Manuel; Ferrer, Ricard et al.
DOI: 10.1159/000518229

A side-by-side comparison of the performance and time-and-motion data of VITEK MS.

PMID: 35841452
Journal: EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECT
Year: 2022
Reference: Eur J Clin Microbiol Infect Dis. 2022 Jul 16. pii: 10.1007/s10096-022-04472-x. doi: 10.1007/s10096-022-04472-x.
Impact factor: 3.267
Publication type: Paper in international publication
Authors: Capron, Nicolas, Louis, Barbara, Lassus, Anna, Pumarola, Tomas, Larrosa, M Nieves, Gonzalez-Lopez, Juan Jose, Jissam, Ali, Gaskin, Mark, Yamamura, Deborah, Caruso, Arnaldo et al.
DOI: 10.1007/s10096-022-04472-x

Genomic features of predominant non-PCV13 serotypes responsible for adult invasive pneumococcal disease in Spain.

PMID: 35815569
Journal: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
Year: 2022
Reference: J Antimicrob Chemother. 2022 Jul 11. pii: 6639590. doi: 10.1093/jac/dkac199.
Impact factor: 5.79
Publication type: Paper in international publication
Authors: Cercenado, Emilia, Larrosa, Nieves, Quesada, M feminine Dolores, Yuste, Jose, Casabella, Antonio, Cubero, Meritxell, Marimon, Jose Maria, Dominguez, M Angeles, Carrera-Salinas, Anna, Camara, Jordi et al.
DOI: 10.1093/jac/dkac199

Analytical Evaluation of Dried Blood Spot and Rapid Diagnostic Test as a New Strategy for Serological Community Screening for Chronic Chagas Disease.

PMID: 34604116
Journal: Frontiers in Cellular and Infection Microbiology
Year: 2021
Reference: Front Cell Infect Microbiol. 2021 Sep 15;11:736630. doi: 10.3389/fcimb.2021.736630. eCollection 2021.
Impact factor: 5.293
Publication type: Paper in international publication
Authors: Silgado, Aroa, Gual-Gonzalez, Lidia, Oliveira-Souto, Ines, Goterris, Lidia, Serre-Delcor, Nuria, Esperalba, Juliana, Gomez-I-Prat, Jordi, Fernandez-Naval, Candela, Molina, Israel, Pumarola, Tomas et al.
DOI: 10.3389/fcimb.2021.736630

Schools as a Framework for COVID-19 Epidemiological Surveillance of Children in Catalonia, Spain: A Population-Based Study.

PMID: 34568244
Journal: Frontiers in Pediatrics
Year: 2021
Reference: Front Pediatr. 2021 Sep 8;9:754744. doi: 10.3389/fped.2021.754744. eCollection 2021.
Impact factor: 3.418
Publication type: Letter whit IF
Authors: Perramon, Aida, Soriano-Arandes, Antoni, Pino, David, Lazcano, Uxue, Andres, Cristina, Carulla, Mireia, Canadell, Dolors, Ricos, Gemma, Riera-Bosch, M Teresa, Burgaya, Silvia et al.
DOI: 10.3389/fped.2021.754744

Pre-existing Autoantibodies Neutralizing High Concentrations of Type I Interferons in Almost 10% of COVID-19 Patients Admitted to Intensive Care in Barcelona.

PMID: 34570326
Journal: JOURNAL OF CLINICAL IMMUNOLOGY
Year: 2021
Reference: J Clin Immunol. 2021 Nov;41(8):1733-1744. doi: 10.1007/s10875-021-01136-x. Epub 2021 Sep 27.
Impact factor: 8.317
Publication type: Paper in international publication
Authors: Rocamora-Blanch, Gemma, Framil, Mario, Calatayud, Laura, Corbella, Xavier, Casanova, Jean-Laurent, Morandeira, Francisco, Sabater-Riera, Joan, Navarro, Sergio, Antoli, Arnau, Parra-Martinez, Alba et al.
DOI: 10.1007/s10875-021-01136-x

Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.

PMID: 34413139
Journal: Science Immunology
Year: 2021
Reference: Sci Immunol. 2021 Aug 19;6(62). pii: 6/62/eabl4340. doi: 10.1126/sciimmunol.abl4340.
Impact factor: 17.727
Publication type: Paper in international publication
Authors: Bastard, Paul, Gervais, Adrian, Le Voyer, Tom, Rosain, Jeremie, Philippot, Quentin, Manry, Jeremy, Michailidis, Eleftherios, Hoffmann, Hans-Heinrich, Eto, Shohei, Garcia-Prat, Marina et al.
DOI: 10.1126/sciimmunol.abl4340

First national survey of the diagnosis of Helicobacter pylori infection in Clinical Microbiology Laboratories in Spain.

PMID: 31987710
Journal: ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA
Year: 2020
Reference: Enferm Infecc Microbiol Clin. 2020 Nov;38(9):410-416. doi: 10.1016/j.eimc.2019.11.008. Epub 2020 Jan 25.
Impact factor: 1.654
Publication type: Paper in national publication
Authors: Domingo-Garcia, Diego, Canton, Rafael, Gomez-Garcia de la Pedrosa, Elia, Aznar-Cano, Esteban, Leiva, Jose, Montes, Milagrosa, Sanchez-Romero, Isabel, Rodriguez-Diaz, Juan Carlos, Alarcon-Cavero, Teresa, Isabel Suarez Barrenechea, Ana et al.
DOI: 10.1016/j.eimc.2019.11.008

Norovirus detection in environmental samples in norovirus outbreaks in closed and semi-closed settings.

PMID: 32092369
Journal: JOURNAL OF HOSPITAL INFECTION
Year: 2020
Reference: J Hosp Infect. 2020 May;105(1):3-9. doi: 10.1016/j.jhin.2020.02.011. Epub 2020 Feb 21.
Impact factor: 3.271
Publication type: Paper in international publication
Authors: de Benito, J, Rico, E, Perez, C, Belver, A, Sabate, S, Razquin, E, Torner, N, Vileu, R M, de Andres, A, Cunille, M et al.
DOI: 10.1016/j.jhin.2020.02.011

Foraging at Solid Urban Waste Disposal Sites as Risk Factor for Cephalosporin and Colistin Resistant Escherichia coli Carriage in White Storks (Ciconia ciconia).

PMID: 32849315
Journal: Frontiers in Microbiology
Year: 2020
Reference: Front Microbiol. 2020 Jul 28;11:1397. doi: 10.3389/fmicb.2020.01397. eCollection 2020.
Impact factor: 4.235
Publication type: Paper in international publication
Authors: De La Puente, Javier, Hofle, Ursula, Jose Gonzalez-Lopez, Juan, Camacho, Maria Cruz, Sola-Gines, Marc, Moreno-Mingorance, Albert, Manuel Hernandez, Jose, Torres-Medina, Fernando, Ramis, Antoni, Majo, Natalia et al.
DOI: 10.3389/fmicb.2020.01397

Clinical features and origin of cases of parotiditis in an emergency department.

PMID: 32837966
Journal: ANALES DE PEDIATRIA
Year: 2020
Reference: An Pediatr (Engl Ed). 2020 Aug;93(2):127-129. doi: 10.1016/j.anpede.2019.11.007. Epub 2020 Jul 19.
Impact factor: 1.313
Publication type: Letter whit IF
Authors: Scatti-Regas, Aina, Aguilar-Ferrer, Marta Carmen, Anton-Pagarolas, Andres, Martinez-Gomez, Xavier, Gonzalez-Peris, Sebastia et al.
DOI: 10.1016/j.anpede.2019.11.007

A case report of long treatment with Itraconazole in a patient with chronic Chagas disease.

PMID: 31706289
Journal: BMC INFECTIOUS DISEASES
Year: 2019
Reference: BMC Infect Dis. 2019 Nov 9;19(1):956. doi: 10.1186/s12879-019-4608-9.
Impact factor: 2.565
Publication type: Paper in international publication
Authors: Bosch-Nicolau, Pau, Salvador, Fernando, Sanchez-Montalva, Adrian, Sulleiro, Elena, Burgos, Joaquin, Molina, Israel et al.
DOI: 10.1186/s12879-019-4608-9

Risk factors associated with severe outcomes in adult hospitalized patients according to influenza type and subtype.

PMID: 30633778
Journal: PLoS One
Year: 2019
Reference: PLoS One. 2019 Jan 11;14(1):e0210353. doi: 10.1371/journal.pone.0210353. eCollection 2019.
Impact factor: 2.776
Publication type: Paper in international publication
Authors: Martinez, Ana, Soldevila, Nuria, Romero-Tamarit, Arantxa, Torner, Nuria, Godoy, Pere, Rius, Cristina, Jane, Mireia, Dominguez, Angela, Antón Pagarolas, Andres, Pumarola Suñé, Tomàs et al.
DOI: 10.1371/journal.pone.0210353

External validation of the INCREMENT-CPE mortality score in a carbapenem-resistant Klebsiella pneumoniae bacteraemia cohort: the prognostic significance of colistin resistance.

PMID: 31377343
Journal: INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
Year: 2019
Reference: Int J Antimicrob Agents. 2019 Oct;54(4):442-448. doi: 10.1016/j.ijantimicag.2019.07.017. Epub 2019 Aug 1.
Impact factor: 4.615
Publication type: Paper in international publication
Authors: Paterson, David, Pascual, Alvaro, Martinez-Martinez, Luis, Rodriguez-Bano, Jesus, Torre-Cisneros, Julian, Almirante Gragera, Benito, Larrosa Escartin, María Nieves, Puig Asensio, Mireia, REIPI ESGBIS INCREMENT Grp, Carmeli, Yehuda et al.
DOI: 10.1016/j.ijantimicag.2019.07.017

Molecular diagnosis of Pneumocystis jirovecii pneumonia using oral wash samples in immunocompromised patients: usefulness and importance of the DNA target.

PMID: 31578265
Journal: JOURNAL OF CLINICAL MICROBIOLOGY
Year: 2019
Reference: J Clin Microbiol. 2019 Nov 22;57(12). pii: JCM.01287-19. doi: 10.1128/JCM.01287-19. Print 2019 Dec.
Impact factor: 4.959
Publication type: Paper in international publication
Authors: Goterris, Lidia, Fernandez, M A Mancebo, Aguilar-Company, Juan, Falco, Vicenc, Ruiz-Camps, Isabel, Martin-Gomez, M Teresa et al.
DOI: 10.1128/JCM.01287-19

Blog

News

The collaboration will focus on several key areas of mutual interest in microbiology in particular antimicrobial resistance and stewardship.

On European Antibiotic Awareness Day, we highlight the importance of using these medications responsibly and finding innovative solutions to combat this issue.

The new diagnostic method, designed for use in endemic regions, combines a mobile application with a low-cost robotic microscope.