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Microbiology

The Microbiology research group of the Vall d'Hebron Research Institute (VHIR) focuses on the study of microbiological aspects —in basic, translational and clinical research— that could improve the outcome of patients with infectious diseases.

Our priority research areas are:

  • Microbiological surveillance of emerging and re-emerging infectious diseases.
    • Diseases due to viral infections of the respiratory tract
    • Microorganisms that cause vaccine-preventable diseases
    • Infectious diseases of sexual transmission
  • Antimicrobial resistance
  • Sepsis
  • Development and validation of rapid microbiological diagnostic devices.
  • International Health
  • Hepatitis 

We actively collaborate with other microbiology laboratories, health services, national and international centres and organizations, as well as with the different research networks of the Carlos III Health Institute in Spain.

In addition, we carry out an important activity in the surveillance of the genotypic and phenotypic evolution of microorganisms present in the community in terms of their virulence, transmissibility, antigenic escape and antimicrobial resistance, in collaboration with public administrations, both at the national and international level.
 

Publications

A comprehensive assessment of long-term SARS-CoV-2-specific adaptive immune memory in convalescent COVID-19 Solid Organ Transplant recipients.

PMID: 35124011
Journal: KIDNEY INTERNATIONAL
Year: 2022
Reference: Kidney Int. 2022 May;101(5):1027-1038. doi: 10.1016/j.kint.2021.12.029. Epub 2022 Feb 4.
Impact factor: 10.612
Publication type: Paper in international publication
Authors: Fava, Alexandre; Donadeu, Laura; Jouve, Thomas; Gonzalez-Costello, Jose; Llado, Laura; Santana, Carolina; Toapanta, Nestor; Lopez, Manuel; Pernin, Vincent; Facundo, Carme et al.
DOI: 10.1016/j.kint.2021.12.029

Monitoring of SARS-CoV-2 seroprevalence among primary healthcare patients in the Barcelona Metropolitan Area: the SeroCAP sentinel network protocol.

PMID: 35140153
Journal: BMJ Open
Year: 2022
Reference: BMJ Open. 2022 Feb 9;12(2):e053237. doi: 10.1136/bmjopen-2021-053237.
Impact factor: 2.692
Publication type: Paper in international publication
Authors: Esperalba, Juliana; Agusti, Cristina; Angel, Miguel; Fernandez, Munoz Gema; Dopico, Eva; Salvador-Gonzalez, Betlem; Gonzalez, Maria Victoria; Bordas, Anna; Anton, Andres; Violan, Concepcio et al.
DOI: 10.1136/bmjopen-2021-053237

Genetic Variations of the DPYD Gene and Its Relationship with Ancestry Proportions in Different Ecuadorian Trihybrid Populations.

PMID: 35743735
Journal: Journal of Personalized Medicine
Year: 2022
Reference: J Pers Med. 2022 Jun 10;12(6). pii: jpm12060950. doi: 10.3390/jpm12060950.
Impact factor: 4.945
Publication type: Paper in international publication
Authors: Cabrera-Andrade, Alejandro; Tejera, Eduardo; Burgos, German; Lopez-Cortes, Andres; Jaramillo-Koupermann, Gabriela; Flores-Espinoza, Rodrigo; Freire-Paspuel, Byron; Gallardo-Condor, Jennifer; Farinango, Camila et al.
DOI: 10.3390/jpm12060950

Early outcomes in adults hospitalized with severe SARS-CoV-2 infection receiving tocilizumab.

PMID: 35755602
Journal: MEDICINA CLINICA
Year: 2022
Reference: Med Clin. 2022 Jun 10;158(11):509-518. doi: 10.1016/j.medcle.2021.06.023. Epub 2022 Jun 18.
Impact factor: 1.725
Publication type: Paper in international publication
Authors: Sellares-Nadal, Julia; Almirante, Benito; Guillen-Del-Castillo, Alfredo; Sampol, Julia; Augustin, Salvador; Bosch-Nicolau, Pau; Monforte-Pallares, Arnau; Sempere-Gonzalez, Abiu; Eremiev-Eremiev, Simeon; Miarons, Marta et al.
DOI: 10.1016/j.medcle.2021.06.023

Re-emergence of enterovirus D68 in Europe after easing the COVID-19 lockdown, September 2021.

PMID: 34763750
Journal: Eurosurveillance
Year: 2021
Reference: Euro Surveill. 2021 Nov;26(45). doi: 10.2807/1560-7917.ES.2021.26.45.2100998.
Impact factor: 6.307
Publication type: Paper in international publication
Authors: Jeannoel, Marion, Costa, Ines, Cottrell, Simon, Del Cuerpo, Margarita, Dean, Jonathan, Dembinski, Jennifer L, Diedrich, Sabine, Diez-Domingo, Javier, Dorenberg, DagnyHaug, Duizer, Erwin et al.
DOI: 10.2807/1560-7917.ES.2021.26.45.2100998

Changes in the microbiological diagnosis and epidemiology of cutaneous leishmaniasis in real-time PCR era: A six-year experience in a referral center in Barcelona.

PMID: 34758023
Journal: PLoS Neglected Tropical Diseases
Year: 2021
Reference: PLoS Negl Trop Dis. 2021 Nov 10;15(11):e0009884. doi: 10.1371/journal.pntd.0009884. eCollection 2021 Nov.
Impact factor: 4.411
Publication type: Paper in international publication
Authors: Silgado, Aroa, Armas, Mayuli, Sanchez-Montalva, Adrian, Goterris, Lidia, Ubals, Maria, Temprana-Salvador, Jordi, Aparicio, Gloria, Chicharro, Carmen, Serre-Delcor, Nuria, Ferrer, Berta et al.
DOI: 10.1371/journal.pntd.0009884

Identification of Recent Tuberculosis Exposure Using QuantiFERON-TB Gold Plus, a Multicenter Study.

PMID: 34756079
Journal: Microbiology Spectrum
Year: 2021
Reference: Microbiol Spectr. 2021 Dec 22;9(3):e0097221. doi: 10.1128/Spectrum.00972-21. Epub 2021 Nov 10.
Impact factor: 7.171
Publication type: Paper in international publication
Authors: Balcells, Maria Elvira, Gazel, Deniz, Montiel, Natalia, Vicente, Diego, Goic-Barisic, Ivana, Schon, Thomas, Paues, Jakob, Marekovic, Ivana, Cacho-Calvo, Juana, Barac, Aleksandra et al.
DOI: 10.1128/Spectrum.00972-21

Isolation strategy for controlling the spread of multidrug-resistant organisms: Is this still an essential option in hospitals?

PMID: 34736746
Journal: ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA
Year: 2021
Reference: Enferm Infecc Microbiol Clin (Engl Ed). 2021 Nov;39(9):425-428. doi: 10.1016/j.eimce.2021.04.007.
Impact factor: 1.731
Publication type: Editorail in international publication
Authors: Larrosa, Maria Nieves, Almirante, Benito et al.
DOI: 10.1016/j.eimce.2021.04.007

Erratum for Hernandez et al., "Invasive Pneumococcal Disease and Influenza Activity in a Pediatric Population: Impact of PCV13 Vaccination in Epidemic and Nonepidemic Influenza Periods".

PMID: 32963082
Journal: JOURNAL OF CLINICAL MICROBIOLOGY
Year: 2020
Reference: J Clin Microbiol. 2020 Sep 22;58(10). pii: 58/10/e02021-20. doi: 10.1128/JCM.02021-20. Print 2020 Sep 22.
Impact factor: 5.897
Publication type: Letter or abstract
Authors: Garcia-Garcia, Juan Jose, Dominguez, Angela, Moraga-Llop, Fernando, Diaz, Alvaro, Codina, Maria Gemma, Izquierdo, Conchita, Hernandez, Sergi, Munoz-Almagro, Carmen, Ciruela, Pilar, Soldevila, Nuria et al.
DOI: 10.1128/JCM.02021-20

Insights into immune evasion of human metapneumovirus: novel 180- and 111-nucleotide duplications within viral G gene throughout 2014-2017 seasons in Barcelona, Spain.

PMID: 32957052
Journal: JOURNAL OF CLINICAL VIROLOGY
Year: 2020
Reference: J Clin Virol. 2020 Nov;132:104590. doi: 10.1016/j.jcv.2020.104590. Epub 2020 Aug 11.
Impact factor: 2.777
Publication type: Paper in international publication
Authors: Martin-Gomez, Maria Teresa, Esperalba, Juliana, Codina, Maria Gema, Pumarola, Tomas, Anton, Andres, Andres, Cristina, Nuvials, Francesc Xavier, Sancho, Javier, Valls, Maria, Pinana, Maria et al.
DOI: 10.1016/j.jcv.2020.104590

Comparison of DNA extraction methods and real-time PCR assays for the molecular diagnostics of chronic Chagas disease.

PMID: 32954845
Journal: Future Microbiology
Year: 2020
Reference: Future Microbiol. 2020 Aug;15:1139-1145. doi: 10.2217/fmb-2020-0023.
Impact factor: 2.907
Publication type: Paper in international publication
Authors: Silgado, Aroa, Moure, Zaira, de Oliveira, Maykon T, Serre-Delcor, Nuria, Salvador, Fernando, Oliveira, Ines, Molina, Israel, Pumarola, Tomas, Ramirez, Juan C, Sulleiro, Elena et al.
DOI: 10.2217/fmb-2020-0023

Detection of Streptococcus pneumoniae antigen in pleural fluid: usefulness of an immunofluorescence-based lateral flow assay for the diagnosis of pneumococcal pneumonia.

PMID: 32896751
Journal: DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
Year: 2020
Reference: Diagn Microbiol Infect Dis. 2020 Dec;98(4):115162. doi: 10.1016/j.diagmicrobio.2020.115162. Epub 2020 Aug 5.
Impact factor: 2.499
Publication type: Paper in international publication
Authors: Romero Herrero, Daniel, Soler-Palacin, Pere, Burgos Cibrian, Joaquin, Falco Ferrer, Vicenc, Anton Pagarolas, Andres, Martin-Gomez, M Teresa et al.
DOI: 10.1016/j.diagmicrobio.2020.115162

Rhodomyrtone decreases Staphylococcus aureus SigB activity during exponentially growing phase and inhibits haemolytic activity within membrane vesicles.

PMID: 30583020
Journal: MICROBIAL PATHOGENESIS
Year: 2019
Reference: Microb Pathog. 2019 Mar;128:112-118. doi: 10.1016/j.micpath.2018.12.019. Epub 2018 Dec 21.
Impact factor: 2.581
Publication type: Paper in international publication
Authors: Calbo, E, Martinez, J A, Marco, F, Chaves, F, Lagarde, M, Lopez-Medrano, F, Montejo, J M, Bereciertua, E, Hernandez, J L, von Wichmann, M A et al.
DOI: 10.1016/j.micpath.2018.12.019

Evaluation of perceived quality in non-restrictive interventions within the antimicrobial stewardship program in pediatrics (PROA-NEN).

PMID: 30606492
Journal: ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA
Year: 2019
Reference: Enferm Infecc Microbiol Clin. 2019 Mar;37(3):215-217. doi: 10.1016/j.eimc.2018.11.012. Epub 2018 Dec 31.
Impact factor: 1.685
Publication type: Letter or abstract
Authors: Barcelo, Maria Estrella, Navarro-Royo, Elisa, Melendo-Perez, Susana, Fenoy-Alejandre, Marina, Morey-Olive, Miriam, Soler-Palacin, Pere, Soler-Palacin, Pere, Melendo-Perez, Susana, Mendoza-Palomar, Natalia, Fernandez-Polo, Aurora et al.
DOI: 10.1016/j.eimc.2018.11.012

Is Polymerase Chain Reaction in Neonatal Dried Blood Spots Reliable for the Diagnosis of Congenital Cytomegalovirus Infection?

PMID: 30199483
Journal: PEDIATRIC INFECTIOUS DISEASE JOURNAL
Year: 2019
Reference: Pediatr Infect Dis J. 2019 May;38(5):520-524. doi: 10.1097/INF.0000000000002144.
Impact factor: 2.317
Publication type: Paper in international publication
Authors: Vives-Onos, Isabel, Codina-Grau, Maria Gema, Noguera-Julian, Antoni, Blazquez-Gamero, Daniel, Fortuny, Claudia, Baquero-Artigao, Fernando, Frick, Marie Antoinette, Saavedra-Lozano, Jesus, Goycochea-Valdivia, Walter, Rives-Ferreiro, Maria Teresa et al.
DOI: 10.1097/INF.0000000000002144

Microbiological diagnosis of bacteraemia and fungaemia: Blood cultures and molecular methods.

PMID: 29691073
Journal: ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA
Year: 2019
Reference: Enferm Infecc Microbiol Clin. 2019 May;37(5):335-340. doi: 10.1016/j.eimc.2018.03.005. Epub 2018 Apr 22.
Impact factor: 1.685
Publication type: Review in international publication
Authors: Guna Serrano, Maria Remedio, Larrosa Escartin, Nieves, Marin Arriaza, Mercedes, Rodriguez Diaz, Juan Carlos et al.
DOI: 10.1016/j.eimc.2018.03.005

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